3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08305

Details:

PFam ID : PF08305

PFam Domain Description : NPCBM/NEW2 domain

Number of Sequence in 50% Dataset : 126

Number of Sequence in Full Dataset : 249

Average sequence length: 132.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08305	B9XPZ2_9BACT_307_358	76

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08305	E1H4G4_STRPN_244_411	100

Sequence based PCA Plot of the family - PF08305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=104 Length=8
Motif2 Start=55 Length=8
Motif3 Start=6 Length=8
Motif4 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay