3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08303

Details:

PFam ID : PF08303

PFam Domain Description : tRNA ligase kinase domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 64

Average sequence length: 158.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08303	E6ZSQ5_9BASI_556_743	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08303	E6ZSQ5_9BASI_556_743	100

Sequence based PCA Plot of the family - PF08303 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=58 Length=8
Motif2 Start=22 Length=11
Motif3 Start=128 Length=8
Motif4 Start=4 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay