3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08302

Details:

PFam ID : PF08302

PFam Domain Description : Fungal tRNA ligase phosphodiesterase domain

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 87

Average sequence length: 213.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08302	A1D650_NEOFI_1_187	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08302	Q6FJW3_CANGA_561_830	100

Sequence based PCA Plot of the family - PF08302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=148 Length=8
Motif3 Start=136 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay