3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08300

Details:

PFam ID : PF08300

PFam Domain Description : Hepatitis C virus non-structural 5a zinc finger domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 94

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08300	D3W7R1_9HEPC_1232_1249	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08300	D8X148_9FLAV_2090_2153	100

Sequence based PCA Plot of the family - PF08300 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay