3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08299

Details:

PFam ID : PF08299

PFam Domain Description : Bacterial dnaA protein helix-turn-helix

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 931

Average sequence length: 68.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08299	D7AG52_GEOSK_210_406	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08299	C5B0P3_METEA_58_128	100

Sequence based PCA Plot of the family - PF08299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay