3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08290

Details:

PFam ID : PF08290

PFam Domain Description : Hepatitis core protein, putative zinc finger

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 76

Average sequence length: 26.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08290	B2Y6S7_HBV_1_18	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08290	Q91PN9_HBV_1_26	100

Sequence based PCA Plot of the family - PF08290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay