3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08289

Details:

PFam ID : PF08289

PFam Domain Description : Influenza Matrix protein (M2)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 16

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08289	A8K382_HUMAN_72_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08289	Q068N3_9INFA_158_251	100

Sequence based PCA Plot of the family - PF08289 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay