3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08285

Details:

PFam ID : PF08285

PFam Domain Description : Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 105

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08285	A2R2C6_ASPNC_1_46	46.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08285	F0VG66_NEOCA_1_110	99.0

Sequence based PCA Plot of the family - PF08285 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=50 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay