3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08283

Details:

PFam ID : PF08283

PFam Domain Description : Geminivirus rep protein central domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 373

Average sequence length: 102.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08283	Q021R4_SOLUE_42_286	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08283	E9N6U7_9GEMI_145_240	98.9

Sequence based PCA Plot of the family - PF08283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay