3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08282

Details:

PFam ID : PF08282

PFam Domain Description : haloacid dehalogenase-like hydrolase

Number of Sequence in 50% Dataset : 1649

Number of Sequence in Full Dataset : 4994

Average sequence length: 203.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08282	Q021R4_SOLUE_42_286	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08282	C6SSR5_STRMN_1_114	100

Sequence based PCA Plot of the family - PF08282 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=217 Length=20
Motif2 Start=196 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay