3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08279

Details:

PFam ID : PF08279

PFam Domain Description : HTH domain

Number of Sequence in 50% Dataset : 483

Number of Sequence in Full Dataset : 3126

Average sequence length: 54.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08279	C5BMY8_TERTT_497_633	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08279	E4NS75_HALBP_19_70	99.4

Sequence based PCA Plot of the family - PF08279 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay