3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08275

Details:

PFam ID : PF08275

PFam Domain Description : DNA primase catalytic core, N-terminal domain

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 1314

Average sequence length: 125.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08275	D9IC87_9CAUD_170_220	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08275	E1YBI3_9DELT_150_310	100

Sequence based PCA Plot of the family - PF08275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=123 Length=8
Motif2 Start=32 Length=8
Motif3 Start=106 Length=14
Motif4 Start=137 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay