3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08273

Details:

PFam ID : PF08273

PFam Domain Description : Zinc-binding domain of primase-helicase

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 156

Average sequence length: 37.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08273	F2LSN3_BURGA_31_70	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08273	B6WRM8_9DELT_22_74	90.3

Sequence based PCA Plot of the family - PF08273 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=39 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay