3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08272

Details:

PFam ID : PF08272

PFam Domain Description : Topoisomerase I zinc-ribbon-like

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 152

Average sequence length: 41.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08272	C4LEI1_TOLAT_759_798	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08272	A0Z9F8_9GAMM_835_873	69

Sequence based PCA Plot of the family - PF08272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay