3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08270

Details:

PFam ID : PF08270

PFam Domain Description : M protein trans-acting positive regulator (MGA) PRD domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 52

Average sequence length: 177.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08270	Q48ZP0_STRP1_170_292	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08270	E7FRY3_9LACO_170_388	90.1

Sequence based PCA Plot of the family - PF08270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay