3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08269

Details:

PFam ID : PF08269

PFam Domain Description : Cache domain

Number of Sequence in 50% Dataset : 359

Number of Sequence in Full Dataset : 1009

Average sequence length: 90.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08269	C9QC54_VIBOR_1_67	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08269	C9QC54_VIBOR_1_67	100

Sequence based PCA Plot of the family - PF08269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=40 Length=8
Motif4 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay