3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08268

Details:

PFam ID : PF08268

PFam Domain Description : F-box associated domain

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 478

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08268	B9STW7_RICCO_216_322	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08268	D7MVE0_ARALL_17_167	100

Sequence based PCA Plot of the family - PF08268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=8
Motif2 Start=3 Length=18
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay