3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08266

Details:

PFam ID : PF08266

PFam Domain Description : Cadherin-like

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 465

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08266	PCDBI_HUMAN_3_58	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08266	Q60I63_DANRE_27_87	100

Sequence based PCA Plot of the family - PF08266 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=14 Length=11
Motif3 Start=3 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay