3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08265

Details:

PFam ID : PF08265

PFam Domain Description : YL1 nuclear protein C-terminal domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 200

Average sequence length: 29.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08265	Q4N205_THEPA_661_793	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08265	D8SJ79_SELML_1_21	100

Sequence based PCA Plot of the family - PF08265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay