3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08264

Details:

PFam ID : PF08264

PFam Domain Description : Anticodon-binding domain of tRNA

Number of Sequence in 50% Dataset : 620

Number of Sequence in Full Dataset : 5649

Average sequence length: 145.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08264	Q4N205_THEPA_661_793	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08264	C6KT64_PLAF7_1062_1274	100

Sequence based PCA Plot of the family - PF08264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=11
Motif2 Start=20 Length=8
Motif3 Start=1 Length=8
Motif4 Start=66 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay