3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08263

Details:

PFam ID : PF08263

PFam Domain Description : Leucine rich repeat N-terminal domain

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 2394

Average sequence length: 40.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08263	B9FD48_ORYSJ_1_22	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08263	B9SGA2_RICCO_27_76	91.2

Sequence based PCA Plot of the family - PF08263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=30
Motif2 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay