Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08258
Details:

PFam ID : PF08258

PFam Domain Description : WWamide peptide

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 8

Average sequence length: 6.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08258B7LVR6_ESCF3_1_14No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08258A1XI83_APLCA_406_412100
Sequence based PCA Plot of the family - PF08258 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay