3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08256

Details:

PFam ID : PF08256

PFam Domain Description : Aurein-like antibiotic peptide

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 15

Average sequence length: 12.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08256	B7LVR6_ESCF3_1_14	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08256	AUR26_LITRA_1_13	92.8

Sequence based PCA Plot of the family - PF08256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay