3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08255

Details:

PFam ID : PF08255

PFam Domain Description : Trp-operon Leader Peptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 6

Average sequence length: 11.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08255	B7LVR6_ESCF3_1_14	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08255	LPW_CITFR_1_14	80

Sequence based PCA Plot of the family - PF08255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay