3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08254

Details:

PFam ID : PF08254

PFam Domain Description : Threonine leader peptide

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 18.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08254	Q7LZ51_PHYBI_2_13	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08254	C8TGD2_ECO26_1_21	100

Sequence based PCA Plot of the family - PF08254 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay