3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08249

Details:

PFam ID : PF08249

PFam Domain Description : Mastoparan protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 7

Average sequence length: 12

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08249	Q7LZ51_PHYBI_2_13	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08249	MAST_VESLE_1_14	83

Sequence based PCA Plot of the family - PF08249 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay