3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08248

Details:

PFam ID : PF08248

PFam Domain Description : Tryptophyllin-3 skin active peptide

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 8

Average sequence length: 10.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08248	Q7LZ51_PHYBI_2_13	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08248	Q7LZ51_PHYBI_2_13	100

Sequence based PCA Plot of the family - PF08248 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay