3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08245

Details:

PFam ID : PF08245

PFam Domain Description : Mur ligase middle domain

Number of Sequence in 50% Dataset : 825

Number of Sequence in Full Dataset : 7957

Average sequence length: 195.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08245	B9HT54_POPTR_67_316	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08245	E2Z7Q8_ENTFA_126_172	100

Sequence based PCA Plot of the family - PF08245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=3 Length=20
Motif3 Start=161 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay