3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08244

Details:

PFam ID : PF08244

PFam Domain Description : Glycosyl hydrolases family 32 C terminal

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 969

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08244	E1QWJ3_OLSUV_448_490	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08244	Q56UM3_ORYSI_2_37	99.1

Sequence based PCA Plot of the family - PF08244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay