3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08242

Details:

PFam ID : PF08242

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 351

Number of Sequence in Full Dataset : 1428

Average sequence length: 102.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08242	Q5KAD8_CRYNE_128_266	76

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08242	Q5KAD8_CRYNE_128_266	100

Sequence based PCA Plot of the family - PF08242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=92 Length=11
Motif3 Start=114 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay