3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08240

Details:

PFam ID : PF08240

PFam Domain Description : Alcohol dehydrogenase GroES-like domain

Number of Sequence in 50% Dataset : 669

Number of Sequence in Full Dataset : 13102

Average sequence length: 98.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08240	D0NAT6_PHYIT_2_59	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08240	D6X6I3_STRPR_44_110	100

Sequence based PCA Plot of the family - PF08240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=17
Motif2 Start=44 Length=8
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay