3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08239

Details:

PFam ID : PF08239

PFam Domain Description : Bacterial SH3 domain

Number of Sequence in 50% Dataset : 722

Number of Sequence in Full Dataset : 2535

Average sequence length: 52.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08239	E6UDF4_RUMA7_43_99	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08239	F0RE46_CELLC_29_71	100

Sequence based PCA Plot of the family - PF08239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=11
Motif2 Start=15 Length=8
Motif3 Start=66 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay