3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08235

Details:

PFam ID : PF08235

PFam Domain Description : LNS2 (Lipin/Ned1/Smp2)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 160

Average sequence length: 146.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08235	D7MU91_ARALL_6_68	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08235	D2VFB6_NAEGR_456_633	100

Sequence based PCA Plot of the family - PF08235 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=164 Length=8
Motif3 Start=2 Length=8
Motif4 Start=142 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay