3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08234

Details:

PFam ID : PF08234

PFam Domain Description : Chromosome segregation protein Spc25

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 124

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08234	B1N4B6_ENTHI_139_208	67.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08234	A7TF82_VANPO_150_227	100

Sequence based PCA Plot of the family - PF08234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=58 Length=8
Motif3 Start=9 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay