3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08230

Details:

PFam ID : PF08230

PFam Domain Description : Cpl-7 lysozyme C-terminal domain

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 100

Average sequence length: 40.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08230	E3L0I5_PUCGT_147_393	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08230	B6GDG2_9ACTN_227_262	100

Sequence based PCA Plot of the family - PF08230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=23 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay