3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08227

Details:

PFam ID : PF08227

PFam Domain Description : DASH complex subunit Hsk3 like

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 38

Average sequence length: 44.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08227	C6N2M1_9GAMM_8_95	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08227	HSK3_ASHGO_6_52	91.8

Sequence based PCA Plot of the family - PF08227 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay