3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08226

Details:

PFam ID : PF08226

PFam Domain Description : Domain of unknown function (DUF1720)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 83

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08226	C6N2M1_9GAMM_8_95	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08226	E6R855_CRYGW_1121_1207	98.7

Sequence based PCA Plot of the family - PF08226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay