3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08224

Details:

PFam ID : PF08224

PFam Domain Description : Domain of unknown function (DUF1719)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 59

Average sequence length: 186.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08224	C5WVM9_SORBI_99_221	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08224	C5YPX2_SORBI_97_342	100

Sequence based PCA Plot of the family - PF08224 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=234 Length=11
Motif2 Start=142 Length=8
Motif3 Start=39 Length=8
Motif4 Start=211 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay