3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08222

Details:

PFam ID : PF08222

PFam Domain Description : CodY helix-turn-helix domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 67

Average sequence length: 59.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08222	A2FRS6_TRIVA_9_69	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08222	E1DNU4_VIBPA_41_96	98.4

Sequence based PCA Plot of the family - PF08222 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay