3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08220

Details:

PFam ID : PF08220

PFam Domain Description : DeoR-like helix-turn-helix domain

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 2553

Average sequence length: 55.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08220	E5URT9_9BACE_482_523	62.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08220	D7BHL0_MEISD_4_51	100

Sequence based PCA Plot of the family - PF08220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay