3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08218

Details:

PFam ID : PF08218

PFam Domain Description : Citrate lyase ligase C-terminal domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 140

Average sequence length: 170.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08218	D1NF07_HAEIF_1_45	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08218	E9S4S6_TREDE_151_335	100

Sequence based PCA Plot of the family - PF08218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay