3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08217

Details:

PFam ID : PF08217

PFam Domain Description : Fungal domain of unknown function (DUF1712)

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 171

Average sequence length: 224.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08217	D8M639_BLAHO_24_159	51.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08217	A6MK59_CALJA_1_123	81

Sequence based PCA Plot of the family - PF08217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=136 Length=8
Motif3 Start=1 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay