3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08216

Details:

PFam ID : PF08216

PFam Domain Description : Eukaryotic domain of unknown function (DUF1716)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 120

Average sequence length: 101.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08216	E7R7S8_PICAD_24_142	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08216	E7R7S8_PICAD_24_142	100

Sequence based PCA Plot of the family - PF08216 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay