3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08214

Details:

PFam ID : PF08214

PFam Domain Description : Histone acetylation protein

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 202

Average sequence length: 292.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08214	A8X3L3_CAEBR_299_626	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08214	D8Q059_SCHCM_10_398	97.5

Sequence based PCA Plot of the family - PF08214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=233 Length=8
Motif2 Start=38 Length=8
Motif3 Start=56 Length=8
Motif4 Start=169 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay