3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08212

Details:

PFam ID : PF08212

PFam Domain Description : Lipocalin-like domain

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 553

Average sequence length: 139.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08212	D1Y799_9BACT_126_199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08212	Q2NXP2_XANOM_1_76	100

Sequence based PCA Plot of the family - PF08212 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=91 Length=8
Motif3 Start=44 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay