3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08211

Details:

PFam ID : PF08211

PFam Domain Description : Cytidine and deoxycytidylate deaminase zinc-binding region

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 175

Average sequence length: 120.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08211	D1Y799_9BACT_126_199	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08211	A9NWW0_PICSI_135_320	100

Sequence based PCA Plot of the family - PF08211 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=18
Motif2 Start=108 Length=11
Motif3 Start=135 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay