3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08210

Details:

PFam ID : PF08210

PFam Domain Description : APOBEC-like N-terminal domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 149

Average sequence length: 175.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08210	ABEC4_HUMAN_41_233	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08210	E1BP99_BOVIN_23_186	98.6

Sequence based PCA Plot of the family - PF08210 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=8
Motif2 Start=20 Length=8
Motif3 Start=142 Length=11
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay