3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08208

Details:

PFam ID : PF08208

PFam Domain Description : DNA-directed RNA polymerase I subunit RPA34.5

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 85

Average sequence length: 195.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08208	Q8AV94_PETMA_50_256	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08208	C7YHR1_NECH7_323_617	100

Sequence based PCA Plot of the family - PF08208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=106 Length=11
Motif2 Start=3 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay