3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08207

Details:

PFam ID : PF08207

PFam Domain Description : Elongation factor P (EF-P) KOW-like domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 865

Average sequence length: 57.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08207	Q1Q6K5_9BACT_70_136	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08207	C1FF06_MICSR_3_61	99.8

Sequence based PCA Plot of the family - PF08207 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay