3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08205

Details:

PFam ID : PF08205

PFam Domain Description : CD80-like C2-set immunoglobulin domain

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 890

Average sequence length: 85.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08205	D2HVA6_AILME_30_160	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08205	F1ABQ3_MACMU_123_185	100

Sequence based PCA Plot of the family - PF08205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay